Is Obama meddling in the affairs of Honduras?

Not at all. He spoke out strongly and often about the events in Iran and he is speaking out about the events in Honduras. The fact that you have ignored his stance on the Iranian situation does not, in any way, mean that he has not spoken out on it. Whether you are just misinformed or a bald-faced liar, it is untrue statements like this that have caused the Republican opinion to be increasingly ignored and one of the reasons that the Republican party is continuing is slide into irrelevance.